Hi again,
Just to make sure that I understand your point correctly - you possibly mean to say that the first of the two commands (gmx convert-tpr with the extend option) may run as it already have (as the following).
gmx convert-tpr -s old.tpr -o new.tpr -extend N
N : run-time in ps
And then the next production-run (‘mdrun’) command using the built new.tpr and the -cpi option can be made to run in the desired way (as an extension of the erlier MD run).
Could you kindly confirm whether I get it correctly.
Thanks again and Kind regards,
Sankar