GROMACS version:
GROMACS modification: 2023.3
Can you suggest optimal parametrs to set in .mdp file (on all or some stages as minimization, nvt, npt and md) for Gromos 54a7 ff?
I’m using 2023.3 version.
After looking through other posts I found something like that, but I’m not still confindent with this choice:
constraint_algorithm = lincs
constraints = all-bonds (or may be h-bonds)
lincs_iter = 1
lincs_order = 4
cutoff-scheme = Verlet
nstlist = 5 (or may be 10)
ns_type = grid
rlist = 1.4 (or may be 1.0)
coulombtype = PME
rcoulomb = 1.4 (or may be 1.0)
vdw-type = Cut-off
rvdw = 1.4
fourierspacing = 0.12 (or may be 0.18)
pbc = xyz
DispCorr = EnerPres (or may be no)