Standard library logic error

User discussions
1

GROMACS version: 2022.3
GROMACS modification: Yes/No
Hi all,

While using gmx msd I was faced with the error:

Standard library logic error (bug):
(exception type: St12length_error)
vector::_M_default_append

Does anybody know what it is for?

2

Hi!

That’s an internal error in GROMACS. Could you please share the input file and the command you used?

3

I want to calculate the diffusion coefficient of methane in polymer using:

gmx msd -f NPT.trr -s NPT.tpr -o MSD.xvg

4

Hello,

to continue from what Andrey said, can you please open a bug for this on Gitlab (Issues · GROMACS / GROMACS · GitLab) and attach the inputs (or another sample) that cause the bug?

Thanks!

Paul

1 Like
5

Nothing wrong with the command, but, as Paul said, we need the input file to diagnose the problem. You can attach it here; no strict need to go to GitLab (it will make things slightly easier for us, but the difference is minimal).

6

thank you pbauer. I did it.