GROMACS version: 2023.2/2024.1
GROMACS modification: Yes
Hi all! I’m so sorry for the naive question, but I wanted to check whether topology files are initial-position specific, or if they just provide the essential information for binding, etc. I’m hoping to run simulations with different initial phi/psi space conformations, and I wanted to confirm that I can still just use the general topology file, or if needs to be adjusted. Thank you so much in advance!