GROMACS version:2021
GROMACS modification: No
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The manual says: -dist writes the RMSD distribution
. But what does it actually mean?
The y-axis is “counts”, what is that? I only have 5418 frames, why the “counts” in total is 14674653?
This is the first a few lines of the rmsd-dist.xvg
@ title "RMS Distribution"
@ xaxis label "RMS (nm)"
@ yaxis label "counts"
@TYPE xy
0 0
0.0309454 0
0.0618908 0
0.0928362 411
0.123782 12092
0.154727 46490
0.185672 87908
0.216618 108481
0.247563 103013
0.278508 91346
0.309454 75874