Hi everyone,
I am working on a protein that contains a phospho-serine residue. I am using Martini 2.2 force field and GROMACS 2022.5 .
How to handle the phospho-serine residue, as it is not recognized by topology and how can I prepare a protein containing a phospho-serine residue for Martini force field simulation? Is there a specific parameter file or a tutorial that I can follow?
I would appreciate any help or advice on this issue.
Thank you very much.