Joseph
April 17, 2023, 9:06am
1
GROMACS version: 2022
GROMACS modification: No
Can anyone provide a protocol as to how to properly install the charmm36m force field from MacKerell Lab
I copied the unzipped folder to C:\Program Files\GROMACS\share\gromacs\top
however when I use pdb2gmx I do not see the Charmm36m force field, only the Charmm36 force field.
The protein force field included in the release is CHARMM36m, which we consider the standard CHARMM force field at this point.
Joseph
April 17, 2023, 5:57pm
3
Which is the easiest way to verify that it is CHARMM36m instead of the original?
I made the port :)
But we record which files got converted in forcefield.doc, and you’ll find:
aminoacids:
-----------
- toppar_c36_jul22/par_all36m_prot.prm
as the first line. So we’re using CHARMM36m for the protein parameters.
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