Brief description of tools/files:
VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting.
Link: VMD - Visual Molecular Dynamics
Contact person (name and email address): N/A vmd@ks.uiuc.edu
How the work has been tested/reviewed:
I am using VMD to view gromacs generated structures from GRO and TRR files.
I am trying to show the cross section of an STM virus using clip plane however I am getting shadows to those surfaces that was cut:
I am trying to get this instead:
How to perform clip plane without shadows in surfaces in VMD?