GROMACS version: 2018. 3
GROMACS modification: No
I have a quick question about protein-ligand simulation.
I created a .gro file for my ligand, and tried to copy & paste its content into protein.gro.
When the combined file (.pdb) was opened on VMD, it shows both the protein and ligand, but when opened with Discovery Studio, the ligand doesn’t appear.
Will this cause any problem in later steps of MD simulation? or is it just Discovery Studio not recognizing some things?