GROMACS version: 2020.7, 2020.1
GROMACS modification: No
Hi,
I ran simulations with gmx 2020.
I noticed that PyMOL does not display cartoon for frames extracted from the XTC trajectory. I could do it loading a structure and the xtc trajectory in VMD.
The starting and the last .gro files are correct.
The coordinates extracted from XTC are not correct.
The first structure in the attached figure is an xtc frame displayed in pymol.
The second structure is an xtc frame displayed in vmd (distorted not because of aspect ratio manipulation).
The third structure is from the last gro file written at the end of the simulation displayed in pymol.
Do you have any idea what could be the issue?
Do you have any idea how to recover the correct coordinates?
Thanks,
Tamas