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I am trying to equilibrate my system consisting of a monolayer membrane temperature coupling I used v-rescale and pressure coupling I used Berendsen isotropic I ran for 1ns and 10 ns both temperature averages I got good but the pressure average is very low 0.38 sometimes membrane gets cleaved. parameters used for pressure coupling are,
tau_p 5.0 compressibility 4.5e-5 and ref_p 1.0 kindly help me with these
Could you share a visualization of the structure, the commands you used to set it up and copy-paste the output from the commands (notes, warnings, errors, etc)? Essentially, the more info the better