GROMACS version:
GROMACS modification: Yes/No
Here post your question
while perfoming following command:
gmx mdrun -v -deffnm em
i am getting this:
WARNING: Listed nonbonded interaction between particles 9647 and 9657
at distance 2.413 which is larger than the table limit 2.050 nm.
This is likely either a 1,4 interaction, or a listed interaction inside
a smaller molecule you are decoupling during a free energy calculation.
Since interactions at distances beyond the table cannot be computed,
they are skipped until they are inside the table limit again. You will
only see this message once, even if it occurs for several interactions.
IMPORTANT: This should not happen in a stable simulation, so there is
probably something wrong with your system. Only change the table-extension
distance in the mdp file if you are really sure that is the reason.
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