GROMACS version: 2021.X
GROMACS modification: No
Say I define a series of custom Lennard-Jones potentials in my itp, using the “[ pairs ]” section.
Then, in my mdp file, I add the following:
vdw_type = cutoff
vdw-modifier = Potential-shift-verlet
rvdw = 1.1
Will my custom [ pairs ] potentials also be affected by the vdw modifications in the mdp?