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Energy minimizing multiple frames of an MD trajectory
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0
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29
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September 12, 2025
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Getting error in pdb2gmx
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0
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31
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September 9, 2025
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Requirement of Gallium phosphide(GaP) forcefield prameters for MD calculation
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0
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28
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June 8, 2025
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Position Restraints Applied on the Whole System Even Though it was Only Defined for FW
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0
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29
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May 22, 2025
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Compiling standalone C/C++ analysis scripts for gromacs
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0
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27
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April 16, 2025
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Ionic liquid vacuum space in NPT
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1
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21
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March 29, 2026
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All atom membrane
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0
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30
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January 9, 2026
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Allow extra mpiexec parameters for GNU openmpi tests run
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0
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29
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December 23, 2025
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How to generate an .itp file for MoSSe
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0
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26
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September 17, 2025
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Charmmgui generated parameters how to use in gromacs for box preparation
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0
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29
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June 4, 2025
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Ligand coordinates not matching in solv and topol
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0
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28
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April 26, 2025
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Lincs Warning-Alchemical free energy calculations
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0
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27
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April 24, 2025
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Pdb2gmx handling altlocs
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1
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18
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January 26, 2026
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Surface tension in polymer films with vaccum
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0
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31
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August 6, 2025
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Surface tension of liquid drop
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0
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25
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July 8, 2025
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Beadspring using Gromacs
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0
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30
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May 22, 2025
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Need help minimising a backmapped system (I used backward method)
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0
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25
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May 12, 2025
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no default bond types, angle types or dihedral types
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1
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22
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February 4, 2026
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Assertion failed for buckingham interacting solid
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1
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17
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October 28, 2025
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Define ATP+mg in Amber forcefield
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0
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26
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February 23, 2026
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Radial distribution function calculation parameter rmax selection
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0
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29
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October 15, 2025
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Equilibration of new lipid model
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0
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24
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July 16, 2025
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Generate topol.top file
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0
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26
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April 19, 2025
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SMD simulation using gold nano particle
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0
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37
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July 26, 2025
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How to prepare nucleotides for MD simulation?
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0
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32
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June 26, 2025
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GROMACS computer
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0
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24
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June 5, 2025
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Flat-bottom restraints on specific atoms
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3
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15
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March 10, 2026
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Possible HIS inconsistency in Gromacs CpHMD example
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0
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28
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October 24, 2025
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I need mdp file for my system
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0
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23
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October 11, 2025
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Why Does GROMACS Rename a DG Terminus to DG5 Without Manual Patching?
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0
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24
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July 22, 2025
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Charge Rounding-Off Error
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0
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23
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July 1, 2025
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Compilation of the latest GROMACS (2025.2) with cuDSS support
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0
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22
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June 25, 2025
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Is is good to simulate lipid bilayer with NVE ensemble
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0
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24
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January 26, 2026
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Should I swap group order and sum results for hydrogen bond counts when using `gmx hbond`?
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0
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25
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October 5, 2025
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Density is reducing after nvt equilibration follwed by md production
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0
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23
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August 19, 2025
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Number of digits in rdf data
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0
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22
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July 14, 2025
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Error While running npt equillibration of last frames extracted form complex
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0
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24
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May 22, 2025
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How to make dihedral force constant in CB9H10 cage boron cluster
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0
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23
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May 21, 2025
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plotXVG: Batch Generation of Publication-Quality Graphs from GROMACS Output
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0
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22
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March 30, 2026
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Error in computing the lateral diffusion in gromacs from tutorial2
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0
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20
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September 1, 2025
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GROMACS not recognizing a PDB atom entry
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0
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20
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August 25, 2025
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High LJ (SR) in graphene sheet minimization
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0
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21
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July 28, 2025
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Gmx make_ndx - index Ca and H instead of N and H
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0
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30
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June 22, 2025
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Fatal error: Residue type 'NMA' not found in residue topology database
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0
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20
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May 23, 2025
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SMD output files and interpretation
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0
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22
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May 2, 2025
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Dihedral_restraints
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0
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22
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April 25, 2025
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GROMACS 2024.2 cannot use RTX 5050 Laptop GPU under WSL
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1
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16
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April 1, 2026
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Simulating a protein or DNA with multiple ligands
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1
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15
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March 29, 2026
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Gromacs-CP2k energy minimization
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0
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27
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February 24, 2026
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Issue with Coarse-Grained Lipid Bilayer + Protein Simulation (Missing Frames After ~36 µs)
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0
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19
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February 18, 2026
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