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Equilibration not work
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0
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21
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February 17, 2026
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GROMACS number of molecules
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0
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23
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November 8, 2025
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Gmx_mdmat_basics
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0
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24
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October 8, 2025
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Number of water cluster in gromacs 2022?
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0
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22
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June 25, 2025
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Install Gromacs using conda
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1
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17
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April 4, 2026
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[umbrella sampling] Can I use "pull_coord1_geometry = direction" for complexes with cyclodextrins?
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1
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16
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March 9, 2026
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Instantaneous positional shifts of protein trajectory
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1
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15
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February 4, 2026
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Gmx cluster and ions
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0
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31
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March 11, 2026
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Protein Comparison
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0
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21
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August 9, 2025
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Insert the simulation box
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0
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19
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July 29, 2025
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PBC Box Failing to Expand to Input .gro File Parameters + Unwanted Position Restrained Protein
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0
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20
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May 26, 2025
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Window spacing in drug pull
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0
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22
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April 26, 2025
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How to plot viscosity in xmgrace by gmx tcaf
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2
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11
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March 3, 2026
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PCA and DCCA analysis
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0
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21
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December 4, 2025
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High potential energy
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0
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17
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October 26, 2025
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Using PMX for ΔΔG on a glycosylated Fc (P238D back-mutation; PDB 3WJJ): viable workflows?
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0
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17
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October 12, 2025
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Ionic liquid simulation with dielectric filed
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0
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21
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June 25, 2025
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Energy grps splitting to calculate interaction energy of single water
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1
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20
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March 11, 2026
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Abnormal dVremain/dl values in GROMACS 2025.0 with vdw-type=pme and free-energy
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3
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11
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March 31, 2026
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Issues regarding MDrun in HPC
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0
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22
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March 26, 2026
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SASA Calculation
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0
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16
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March 18, 2026
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Regarding usage of -pbc yes while calculating mindist
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0
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18
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December 5, 2025
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Exact control over kinetic energy by manual velocity setting
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0
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21
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June 12, 2025
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Ligand atoms miss matched after extract from protein ligand complex
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0
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17
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June 11, 2025
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PBC Artifacts in 20 bp DNA System
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0
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18
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April 16, 2025
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PEG2000 collapsing into bilayer core in atomistic simulation (GROMOS 53A6)
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0
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19
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March 19, 2026
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MSD calculation window
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0
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18
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March 16, 2026
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Issue with orienting two monomers during dimer insertion in GoMARTINI membrane system
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0
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17
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February 13, 2026
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Free energy verification by thermodynamic integration in liquid solutions
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0
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20
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January 22, 2026
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Running GROMACS on Posit based Accelerator card
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0
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21
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September 5, 2025
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Why not protein is not come in the selection
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1
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10
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January 31, 2026
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Using tpic widom insertion in gromacs
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0
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15
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February 21, 2026
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electric filed with position restraint
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0
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31
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December 3, 2025
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Segmentation fault or cuda error #700 during eABF/WTM-eABF calculations
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0
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16
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May 17, 2025
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Pdb2gmx says a H is missing from the rtp entry but is not present in pdb
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0
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14
|
March 9, 2026
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How to calculate fluctuation dissipation constant (h)
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0
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14
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February 26, 2026
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Ion Channel PMF calculation analysis
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0
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13
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February 24, 2026
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Discussion on sugars as an osmolyte
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0
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14
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February 12, 2026
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Observing a bond between Cys S and a hydrogen of a water molecule
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0
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13
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September 14, 2025
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REMD extremely slow wall-clock time despite showing ~3 ns/day in .log file
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0
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15
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August 5, 2025
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Does recentering and rewrapping is required while calculating mean square displacement in GROMACS?
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0
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13
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August 1, 2025
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Predicting densities of aqueous solutions at high temperatures
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0
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15
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August 1, 2025
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Distance restrained in my protein amino acids with Zn ion present in it
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0
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14
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July 30, 2025
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CUDA toolkit in cryoSPARC for GROMACS
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0
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16
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May 27, 2025
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CHARMMGUI Webserver Topologies to GROMACS
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0
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15
|
April 1, 2026
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Segmentation fault - pairdist
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0
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20
|
March 3, 2026
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How to decide the production time in the free energy calculations?
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0
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13
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February 16, 2026
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DSSP stuck
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0
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13
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January 22, 2026
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High protein RMSD vs literature (EGFR–erlotinib MD in GROMACS)
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0
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14
|
October 2, 2025
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Get the Binding residues
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0
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16
|
May 28, 2025
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