|
AWH convergence for a charged ligand permeating a bilayer
|
|
5
|
88
|
July 28, 2026
|
|
Using AWH for bilayer permeability
|
|
18
|
1464
|
April 22, 2026
|
|
AWH with direction-relative | Assertion failed: Condition: weightSum > 0
|
|
4
|
79
|
March 25, 2026
|
|
[umbrella sampling] Can I use "pull_coord1_geometry = direction" for complexes with cyclodextrins?
|
|
1
|
42
|
March 9, 2026
|
|
Pull code (umbrella, distance): Fatal error "Pull reference distance … needs to be non-negative"
|
|
1
|
69
|
February 11, 2026
|
|
PMF for angle rotations
|
|
2
|
767
|
December 19, 2025
|
|
Pull code on a long filament
|
|
7
|
163
|
August 12, 2025
|
|
Osmotic pressure simulations using the pull code
|
|
6
|
175
|
August 7, 2025
|
|
Query about pullf.xvg plot
|
|
4
|
185
|
July 23, 2025
|
|
Pulling simulations help
|
|
1
|
154
|
June 28, 2025
|
|
Simple Pulling script 1D 1 group
|
|
0
|
61
|
May 17, 2025
|
|
LINCS error while performing pull simulations?
|
|
17
|
255
|
March 18, 2025
|
|
Unfolding a 574 aa protein
|
|
0
|
69
|
February 3, 2025
|
|
Simultaneous Pulling of Multiple Protein Segments to Different Target Distances in GROMACS
|
|
4
|
152
|
December 2, 2024
|
|
Pull-force error
|
|
5
|
112
|
November 15, 2024
|
|
Gromacs umbrella sampling error for pull force calculation
|
|
4
|
174
|
October 30, 2024
|
|
Rate and force unit conversion for pulling paramters
|
|
1
|
258
|
October 2, 2024
|
|
How to understand the output after pulling force is applied?
|
|
11
|
571
|
September 20, 2024
|
|
How to apply constant pull force at two ends of a molecule?
|
|
2
|
320
|
September 10, 2024
|
|
Pull code for a single window
|
|
3
|
71
|
August 22, 2024
|
|
Soft/Stiff Spring
|
|
1
|
122
|
August 19, 2024
|
|
Free energy calculation with fixed relative position
|
|
2
|
145
|
August 12, 2024
|
|
Question about absolute reference point/warning for pulling a protein between solvents
|
|
0
|
116
|
July 14, 2024
|
|
Another Problem with Distances Between Pull Groups
|
|
3
|
890
|
July 14, 2024
|
|
Issues with Pulling Protein Through a Pore: High Forces and Restraint Effects
|
|
2
|
126
|
July 11, 2024
|
|
COM pulling of large groups:
|
|
1
|
487
|
May 6, 2024
|
|
Steered MD doesn't produce expected force graph
|
|
1
|
236
|
April 8, 2024
|
|
Assistance Needed with Pulling a Protein Aggregate Through a Protein Pore
|
|
1
|
214
|
April 1, 2024
|
|
Setting pull_coord1_geometry = distance vs pull_coord1_geometry = direction
|
|
0
|
281
|
March 27, 2024
|
|
AWH reaction coordinate
|
|
2
|
705
|
February 14, 2024
|