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Umbrella Sampling - Incomplete WHAM Analysis
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12
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99
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October 22, 2025
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Water chains growing out of MOF membrane (artefact?)
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9
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54
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October 20, 2025
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Is this hardware configuration sufficient for GROMACS?
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8
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77
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October 13, 2025
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Bad diagrams for a protein complex, maybe because of bad trjconv
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6
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80
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October 12, 2025
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Has anyone successfully used GROMACS 2023 with 5070Ti GPUs?
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3
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79
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October 30, 2025
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Hydrogen bond analysis in MD simulation
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2
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53
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October 26, 2025
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GROMACS 2023.4 on RTX5080
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1
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60
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October 10, 2025
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What is the currently best OS for GROMACS?
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1
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48
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October 22, 2025
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NVIDIA ADA gpu (5070 ti and 5080) failed to be used during simulation in gromacs 2024.4
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2
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39
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October 27, 2025
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Change in Volume Fluctuations / Compressibility for TIP4P/2005 Between GROMACS 2016 and 2024
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6
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31
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October 16, 2025
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Free-energy on virtual sites only (or vice versa)
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2
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34
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October 29, 2025
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GROMACS 2025.3 CUDA 13 RTX 5070 Ti Fails on Simulations
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2
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40
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October 14, 2025
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Inaccurate thermostatting when simulating MD water
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1
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43
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October 4, 2025
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System size effect on the solvent density profile
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4
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42
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October 24, 2025
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Constraint in stochastic dynamics
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3
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29
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October 29, 2025
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October 29th, bi-weekly GROMACS developer meeting - morning edition
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2
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34
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October 30, 2025
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Peptide membrane simulation
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2
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28
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October 31, 2025
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How to make index group for backbone atoms of a protein chain
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3
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31
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October 30, 2025
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Feasibility of using Gromacs
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1
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31
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October 24, 2025
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Charge warning when using PLUMED REST2
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1
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27
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October 5, 2025
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Performance of SMD simulation
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1
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30
|
October 10, 2025
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Virtual_sites
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2
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25
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October 30, 2025
|
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Umbrella sampling PMFs with additional restraints
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0
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34
|
October 20, 2025
|
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Free Energy Calculations
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1
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22
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October 22, 2025
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How to simulate a cyclic protein with AMBER99SB ff?
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1
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24
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October 9, 2025
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Umbrella Sampling: Dimension of Reaction Coordinate
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1
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23
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October 29, 2025
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Martini 3 Octanol Coordinate File
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1
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21
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October 22, 2025
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Correctness of RDF between water and protein obtained
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0
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28
|
October 22, 2025
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Adding missing dihedral interactions to a Force Field
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1
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26
|
October 31, 2025
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MSD calculation for lithium ions
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1
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26
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October 16, 2025
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mRNA forcefields issue
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0
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27
|
October 5, 2025
|
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RTX 5090 (sm_120) PTX JIT compilation failure with CUDA 13.0 + Gromacs 2025.3
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0
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26
|
October 16, 2025
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Colvars: get topol chain names to match make_ndx
|
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1
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20
|
October 10, 2025
|
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How to show gmx spatial output as a colourmap (heat map)?
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0
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21
|
October 20, 2025
|
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Most Common GROMACS Combinations for GPU-Accelerated Setup
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2
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26
|
October 16, 2025
|
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Assertion failed for buckingham interacting solid
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1
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13
|
October 28, 2025
|
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Hamiltonian replica exchange (HREX) with plumed fails (acceptance rate of 0)
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0
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21
|
October 27, 2025
|
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Water accumulation in slab geometry
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0
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17
|
October 20, 2025
|
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Is Intel GPU support available in GROMACS through WSL2 Ubuntu on Windows?
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0
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17
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October 19, 2025
|
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I need mdp file for my system
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0
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18
|
October 11, 2025
|
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Configuring gromacs to use mpirun
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1
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12
|
October 31, 2025
|
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Viscosity calculation for Ionic Liquid
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1
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13
|
October 9, 2025
|
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Possible HIS inconsistency in Gromacs CpHMD example
|
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0
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20
|
October 24, 2025
|
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Al-Cl bonds not visible when gro file is opened using vmd
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0
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17
|
October 13, 2025
|
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Should I swap group order and sum results for hydrogen bond counts when using `gmx hbond`?
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0
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20
|
October 5, 2025
|
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Radial distribution function calculation parameter rmax selection
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0
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16
|
October 15, 2025
|
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Tools for creating initial .gro and combining source files
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0
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16
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October 8, 2025
|
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One control to constrain a molecule type
|
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0
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14
|
October 27, 2025
|
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Error at grompp level as the box size is increased?
|
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0
|
16
|
October 31, 2025
|
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Modify residues using CHARMM-GUI pdb reader and manipulator
|
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0
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17
|
October 14, 2025
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