|
IFT in CG simulation using MARTINI 3.0
|
|
0
|
3
|
June 9, 2026
|
|
Shear Viscosity Calculation for Isotropic Molecules
|
|
7
|
57
|
June 9, 2026
|
|
Deform by Gromacs to apply shear rate
|
|
8
|
2545
|
June 9, 2026
|
|
ForceField for Intrisically disordered protein
|
|
14
|
87
|
June 8, 2026
|
|
Charmm36 and lj-pme setting
|
|
0
|
22
|
June 5, 2026
|
|
Statistical Analysis Method for Peak force and total work in Steered molecular dynamics
|
|
3
|
55
|
June 4, 2026
|
|
What if the protein contains mutations and missing residues?
|
|
2
|
48
|
June 4, 2026
|
|
Gmx anaeig problematic error "Dimensions in the eigenvector files don't match"
|
|
4
|
42
|
June 3, 2026
|
|
Modified dihedral notation
|
|
6
|
65
|
June 3, 2026
|
|
open permanent position - Specialist in Scientific Computing (CNPEM, Brazil)
|
|
0
|
31
|
June 2, 2026
|
|
Convert amber to gromacs
|
|
0
|
32
|
June 2, 2026
|
|
10th June, biweekly GROMACS meeting - cancel
|
|
0
|
15
|
June 2, 2026
|
|
Force Field-angle
|
|
2
|
33
|
June 1, 2026
|
|
Is there a way to perform simulations with less standard addatives?
|
|
3
|
42
|
June 1, 2026
|
|
Calculating the free energy of binding using AWH approach
|
|
8
|
115
|
May 28, 2026
|
|
27th May, GROMACS quartely planning meeting 13:00 CEST
|
|
2
|
54
|
May 27, 2026
|
|
Box changing shape after equilibration
|
|
8
|
103
|
May 26, 2026
|
|
GROMACS 2026.3-dev on gfx1201 (RX 9070 XT) - Device detection failure
|
|
5
|
61
|
May 26, 2026
|
|
DCLE diffuse into Bulk solution from membrane after 1.8 ns equilbration in HMMM (Charmm-Gui)
|
|
0
|
29
|
May 26, 2026
|
|
Possible inconsistency when mixing GROMACS 2023.1 and 2025.x for umbrella sampling workflows
|
|
2
|
50
|
May 23, 2026
|
|
Protein small molecule simulation
|
|
1
|
32
|
May 21, 2026
|
|
For those who wanna build on Windows with Visual Studio 2026
|
|
1
|
49
|
May 20, 2026
|
|
Simulation box size?
|
|
7
|
85
|
May 19, 2026
|
|
Water surface tension
|
|
12
|
172
|
May 19, 2026
|
|
Gromacs installation on Fugaku ARM (A64FX) Node with Fujitsu MPI
|
|
8
|
47
|
May 19, 2026
|
|
Excluded distance larger than cutoff in ligand with virtual site
|
|
22
|
619
|
May 19, 2026
|
|
COM motion removal during NVT simulation with electric field
|
|
5
|
76
|
May 19, 2026
|
|
Centering a molecule that crosses periodic boundaries — single-atom trick
|
|
1
|
42
|
May 18, 2026
|
|
How to solve inconsistent shifts over periodic boundaries in protein-dna run in minimization step?
|
|
11
|
3036
|
May 17, 2026
|
|
13th May, bi-weekly GROMACS meeting - morning edition
|
|
2
|
54
|
May 13, 2026
|