GROMACS version: 2022.2
GROMACS modification: No
I simulate molecular dynamics of 1024 water. Water molecule is actually made from quantum calculation using Orca (B3LYP/def2-TZVP) and I set the GAFF from Amber. My simulation consist of minimization; nve, nvt, and npt equilibration; and nvt production. The results of minimization, nve & nvt equilibration seem normal, but when I did npt equilibration, I think my simulation box blew up. I know that normal graph of pressure and volume during npt equilibration is undergoing fluctuation. But the graph of pressure and volume is not fluctuating, it’s exponential graph.
Can anyone help me what actually happen in my simulation? Is it because of force field or something else? Thank you