Free energy landscape calculation using gmx sham module

User discussions
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1

GROMACS version:2018.4
GROMACS modification: Yes/No

I have performed MD simulation and while analyzing the result I want to use gmx sham module and calculate free energy landscape using 2d projec_ev1_ev2.xvg file.
I have got the xpm file and eps file by using xpm2ps command. I have tried using eps to jpg conversation online, but the image got distorted.

Now how do I get to see the eps file? Please suggest.

Thanks in Advance.
I

2

You can use evince in ubuntu to visualise .eps files,just use evince yourfilename.eps .

3

Hello, BIPASAkar,
Can you share the line which you used for generating gibbs.xpm file.
I am unable to get xpm file using the below line
“gmx sham -f 2dproj.xvg -dist ener.xvg -ls gibbs.xpm -lsh enthalpy.xpm -lss entrophy.xpm -g shaml.log -histo edist_200.xvg”