GROMACS version: 2021.4
GROMACS modification: Yes/No
I have a dimer protein where the desired ligand attaches between the dimerizing sections. Using the routine commands for ligand-protein, I encounter issues with force field identification and unfamiliar atoms in the structure during the grompp stage.
I installed GROMACS through the quick installation on Ubuntu Linux 2021.4.
What solutions do you think could exist for this issue?