GROMACS modification: Yes/No
I am familiar with all atom simulation and recently started coarse grain model I have two questions:
1- in the all-atom simulation, we add a force field file in the topology file, and in coarse grain, we added a martini.itp file, I saw this file but I did not found bonded parameters I saw only atom types and nonbound parameters Don’t the beads bind to each other?
2- is it possible to combine all atom with coasre grain?
Thanks in advance for your answer