GROMACS version: 2024.4
GROMACS modification: no
Hello everyone.
I have been trying to “visualize” the denaturation process of a protein with 295 residues. However, despite testing dynamics with 100 and 200 ns, and temperatures such as 400, 500, 700 and even 800K, the RMSD, RG and SASA graphs do not “demonstrate” unequivocally the destruction of the tertiary structure. I would like to receive suggestions.
Thank you all.