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Little to no movement or change in protein structure after 50ns MD
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2
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366
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September 2, 2022
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GROMACS 2022.3 patch release available
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1
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528
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September 2, 2022
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How to use OPLS force filed for my P-L simulations
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0
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188
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September 2, 2022
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Gmx_mpi vs gmx
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2
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2711
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September 2, 2022
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Installing GROMACS on Ubuntu with CUDA GPU Support Fails
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1
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2423
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September 1, 2022
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How to include nmr restraints to the molecular dynamics model
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1
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376
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September 1, 2022
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How to solve Lincs warning in free energy calculation
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15
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2808
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September 1, 2022
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Mdrun cannot find pullf and pullx files during checkpointed restart
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2
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723
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August 31, 2022
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Ion non-bonded parameter mismatch between charmm36 and charmm36 for gromacs
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2
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370
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August 31, 2022
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Regarding CUDA and Gromacs installation
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15
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1999
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August 31, 2022
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All CUDA-capable devices are busy or unavailable
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7
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1938
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August 31, 2022
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Gromacs 2021 on WSL2 with GPU
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2
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666
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August 31, 2022
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Ligand structure changes after energy minimization using Steep descent algorithm
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9
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504
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August 31, 2022
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Simulation freezes on AMD GPU [AMD/ATI] Vega 20 (rev 02)
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1
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578
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August 30, 2022
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Must end groups always be capped towards neutralization to simulate Inquiry?
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2
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239
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August 30, 2022
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Solvation around single protein with water
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1
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409
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August 30, 2022
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How to generate topology files for a peptide having unnatural amino acid and a flexible linker
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0
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382
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August 30, 2022
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Energy drift in NVE
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13
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2612
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August 30, 2022
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Does anyone have a good set of mpirun/gmx options for large MPI/GPU jobs?
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1
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1196
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August 30, 2022
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Again: Floating point exception (8) Floating point divide-by-zero (3)
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25
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2892
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August 30, 2022
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Confusing and possibly incomplete update on gpu error message in gmx2022.2
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5
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1128
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August 30, 2022
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CHARMM36m parameters for 1,2,3,4-tetrahydroisoquinoline-3-carboxylic acid (Tic)
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1
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274
|
August 28, 2022
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Error minimization of energy
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3
|
1296
|
August 26, 2022
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Force field for triphosphate nucleotides
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0
|
210
|
August 26, 2022
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Make Generates Error
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11
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3230
|
August 26, 2022
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Protein simulation got distrupted after final run
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2
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224
|
August 26, 2022
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Error when indexing with back off
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4
|
342
|
August 26, 2022
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Testing GROMACS on Linux ARM64
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9
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686
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August 26, 2022
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How can I generate a topology for a peptide contain unnatural amino acids and a linker ?
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12
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2395
|
August 25, 2022
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Ligand parameterization
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1
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451
|
August 25, 2022
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