GROMACS version:2018.8
GROMACS modification: No
Hello everyone,
I want to convert the parameters of Buckingham potential (A,B,C6) into the parameters of LJ potential (C6,C12). Is there any way to achieve this?
I noticed that one of the commands in gromacs was
gmx sigeps
There’s a line in the manual about this command
In addition, it makes an approximation of a Buckingham potential to a Lennard-Jones potential.
I tried this by substituting the Buckingham potential parameters (A,B,C6) from the literature
gmx sigeps -A 200000 -B 34.07 -C 0.005 -o output.xvg
However, it also does not produce specific LJ potential C6,C12 values, but produces the following data:
So I wonder if this command can get the LJ potential parameters (C6,C12) converted from the Buckingham potential parameters (A,B,C6)? If not, how can I get it?
I’m feeling quite confused at the moment, and I would greatly appreciate it if someone could kindly help me. Thank you so much!