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Is it possible to define improper dihedral angles for sidechain-backbone crosslinks
|
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0
|
227
|
April 12, 2023
|
|
Capping residue ACE not recognised from the rtp file
|
|
14
|
3506
|
April 12, 2023
|
|
Generate topolgy file using pdb and itp files
|
|
2
|
985
|
March 16, 2023
|
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Fatal errors in .rtp file
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|
2
|
437
|
March 16, 2023
|
|
Fatal errors
|
|
0
|
359
|
March 1, 2023
|
|
Error message
|
|
2
|
268
|
February 26, 2023
|
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Error in pdb2gmx command
|
|
2
|
583
|
February 25, 2023
|
|
PDB2GMX for Modified DNA_CHAIN
|
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4
|
305
|
February 17, 2023
|
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Can't create topology for small molecule using pdb2gmx/x2top
|
|
1
|
697
|
February 10, 2023
|
|
Errors in generating topology for RNA with unnatural residues
|
|
3
|
944
|
February 8, 2023
|
|
Mdrun Instability with deprotonated ARG topology with CHARMM36
|
|
0
|
258
|
January 12, 2023
|
|
LINCS algorithm warning dueing NVT run
|
|
0
|
302
|
January 5, 2023
|
|
Atom C1 not found in building block (pdb2gmx fatal error)
|
|
3
|
614
|
November 21, 2022
|
|
Strage behaviour - pdb2gmx
|
|
2
|
531
|
October 19, 2022
|
|
Introducing New atom to the Gromacs forcefield
|
|
2
|
277
|
September 28, 2022
|
|
Problem in generating topology file of a polymer
|
|
9
|
1000
|
September 21, 2022
|
|
A shift in molecules between topol.top and solv.gro
|
|
1
|
253
|
September 18, 2022
|
|
Warnings in Gromacs
|
|
6
|
434
|
September 7, 2022
|
|
Why huge amount of SOL added during gmx genion in some cases?
|
|
5
|
358
|
September 3, 2022
|
|
Little to no movement or change in protein structure after 50ns MD
|
|
2
|
328
|
September 2, 2022
|
|
How to generate topology files for a peptide having unnatural amino acid and a flexible linker
|
|
0
|
316
|
August 30, 2022
|
|
How can I generate a topology for a peptide contain unnatural amino acids and a linker ?
|
|
12
|
1632
|
August 25, 2022
|
|
Secondary neutral amine becomes planar due to wrong virtual site construction
|
|
3
|
223
|
August 25, 2022
|
|
New residue top
|
|
25
|
1768
|
August 18, 2022
|
|
Help on how to solve "atom N not found in building block 1ADE while combining tdb and rtp"
|
|
7
|
3690
|
August 15, 2022
|
|
Energy minimization errors
|
|
3
|
1037
|
August 11, 2022
|
|
Which force field is preferable for the stochastic collision dynamics of Ionic compund?
|
|
0
|
258
|
August 9, 2022
|
|
Acetyllysine parameters
|
|
0
|
361
|
July 30, 2022
|
|
Need to create water simulation box using spce water model
|
|
6
|
1798
|
July 23, 2022
|
|
Adding new residue to charmmForcefield
|
|
5
|
895
|
July 10, 2022
|