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Interfacial tension between oil and water
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|
0
|
411
|
September 15, 2022
|
|
Surface tension result, correct number but negative, Godin
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9
|
594
|
September 15, 2022
|
|
Pca analysis problem
|
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0
|
265
|
September 15, 2022
|
|
Freezegrps are silently overridden for charmm tip3p water molecules that are settled
|
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2
|
329
|
September 15, 2022
|
|
Copy atomtype to new one with the same bonded interactions
|
|
1
|
210
|
September 15, 2022
|
|
Charmm36 ff port has a missing dihedral for some N-terminal NH2 builds
|
|
1
|
452
|
September 15, 2022
|
|
Dramatically different results on GPU and CPU
|
|
2
|
586
|
September 14, 2022
|
|
PMF Calculation
|
|
1
|
749
|
September 14, 2022
|
|
Lmod-style module file for gromacs on a cluster?
|
|
3
|
481
|
September 14, 2022
|
|
REMD restart
|
|
1
|
686
|
September 14, 2022
|
|
I want to calculate mmgbsa for dna ligand interaction
|
|
0
|
257
|
September 14, 2022
|
|
Dna-ligand rmsd graph analyze
|
|
10
|
816
|
September 14, 2022
|
|
Got a fatal error after adding ions command
|
|
2
|
420
|
September 13, 2022
|
|
Problem while reading RNA.rtp in latest OPLS force field
|
|
1
|
365
|
September 13, 2022
|
|
Fatal error in protein - ligand md run
|
|
8
|
705
|
September 12, 2022
|
|
Simulating phosphoserine / phosphothreonine
|
|
3
|
482
|
September 12, 2022
|
|
Getting an 'error' during Ligand topology steps!
|
|
2
|
388
|
September 12, 2022
|
|
Strip solvent from trajectory - Cannot do both runtime modification and charge-zeroing/index
|
|
6
|
1361
|
September 12, 2022
|
|
How to compute energies of individual proteins in a system using GROMACS gmx mdrun rerun?
|
|
2
|
523
|
September 12, 2022
|
|
Ligand addition to a membrane protein - lipid bilayer system and Gromacs Simulation?
|
|
0
|
273
|
September 10, 2022
|
|
Managing long simulations (restart and new MD2 run cases)?
|
|
3
|
328
|
September 9, 2022
|
|
RMSD Analysis
|
|
1
|
505
|
September 9, 2022
|
|
Grommp adding molecules?
|
|
1
|
394
|
September 9, 2022
|
|
New "names" for ions and carbohydrate?
|
|
3
|
494
|
September 9, 2022
|
|
Extending NVT simulation time
|
|
1
|
281
|
September 9, 2022
|
|
Inquiry regarding protonation status
|
|
2
|
328
|
September 9, 2022
|
|
Coordinated Water molecules in PDB crystal structure
|
|
1
|
691
|
September 8, 2022
|
|
LINCS going haywire for hydronium ion
|
|
2
|
410
|
September 8, 2022
|
|
Asymmetric membranes and PMF
|
|
8
|
611
|
September 8, 2022
|
|
How to install and run ACPYPE on Linux?
|
|
28
|
5553
|
September 8, 2022
|