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Can I give an arbitrary name for an index?
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4
|
2500
|
March 4, 2022
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Can a lysine residue be set as neutral, i.e. zero charge without protonation?
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15
|
1082
|
March 3, 2022
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|
File input/output error: tprout.tpr
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7
|
1426
|
March 3, 2022
|
|
Adding ions
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4
|
1614
|
March 3, 2022
|
|
Gromacs -charm-gui-minimization
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4
|
470
|
March 3, 2022
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How to select from a list of area_shrink_step.dat the correct one for my lipid bilayer system?
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4
|
275
|
March 3, 2022
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Value of the \sigma parameter for TIP4P water potentially incorrect in charmm36-jul2021.ff
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2
|
452
|
March 3, 2022
|
|
SASA Calculating for protein-ligand
|
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4
|
1651
|
March 3, 2022
|
|
How can GROMACS recognize halogens such as chlorine as hydrogen bond acceptor?
|
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4
|
478
|
March 3, 2022
|
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Simulating protein in the presence of 8M urea
|
|
2
|
528
|
March 3, 2022
|
|
Atom H1 in residue ACE 1 was not found in rtp entry
|
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1
|
732
|
March 3, 2022
|
|
Problem with calculating the interaction energy between two groups
|
|
1
|
507
|
March 3, 2022
|
|
Why is mpi thinking gromacs args are for mpi?
|
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3
|
656
|
March 3, 2022
|
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Hydrogen bond lifetime calculation
|
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0
|
532
|
March 3, 2022
|
|
Which version of the gromacs trajectory files can be used for g_mmpbsa?
|
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1
|
296
|
March 2, 2022
|
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Questions about using two gpus on one node, parallization across the node, and interpreting the outs
|
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1
|
617
|
March 2, 2022
|
|
Issue with gmx extract-cluster
|
|
1
|
539
|
March 2, 2022
|
|
Simulated tempering with non-equal occupancy of states
|
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0
|
326
|
March 1, 2022
|
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Electrostatic pme/cut-off with zero partial charges
|
|
3
|
951
|
March 1, 2022
|
|
Gromacs (Illegal instruction (core dumped))
|
|
3
|
1708
|
March 1, 2022
|
|
Gromacs 2020.4 installerror: #error "compiling simd-avx2.h without avx2 support"
|
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0
|
757
|
March 1, 2022
|
|
Calculating diffusion coefficient with MSD (gmx msd)
|
|
0
|
1011
|
February 28, 2022
|
|
Double system/single box simulation - Free energy calculation
|
|
0
|
393
|
February 28, 2022
|
|
Change of protein-protein-interaction free energy upon ligand binding (procedure and controls)
|
|
0
|
597
|
February 27, 2022
|
|
How could someone get the entropic and enthalpic contributions of a free energy calculation?
|
|
1
|
417
|
February 27, 2022
|
|
Binding free energy
|
|
0
|
242
|
February 27, 2022
|
|
How to calculate structure factor in Gromacs
|
|
0
|
449
|
February 26, 2022
|
|
The atom order (i,j,k,l) in defining an improper dihedral in Gromacs using the OPLS-AA force field
|
|
2
|
1999
|
February 26, 2022
|
|
2 particles communicated to PME rank 23 are more than 2/3 times the cut-off out
|
|
0
|
1169
|
February 25, 2022
|
|
Domain-domain interactions
|
|
0
|
241
|
February 25, 2022
|