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Topology file error after adding dihedral
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2
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148
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May 31, 2024
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How to use the .top file generated by acpype to set up the simulation system?
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3
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3200
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May 31, 2024
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Checkpoint file is not written
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6
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671
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May 31, 2024
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Querry about -pinoffset -pinstride in gmx mdrun
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4
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226
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May 31, 2024
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How to apply repeating boundary conditions in only the x-y dimensions?
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7
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129
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May 31, 2024
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Fatal error: There were 2 errors in input file(s) during ionization by using grompp module
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1
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104
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May 31, 2024
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Gmx mdrun with GPU
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3
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1092
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May 31, 2024
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Severe problem in center of mass calculation
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2
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65
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May 30, 2024
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Rapid Dissociation
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3
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131
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May 30, 2024
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Optimization CPU time
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1
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73
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May 30, 2024
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Calculation of distance between two atoms (amino acid and linad)
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3
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77
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May 30, 2024
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Inquiry on Performing Replica Exchange Umbrella Sampling MD in GROMACS
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1
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110
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May 30, 2024
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Unable to Simulate Two Ligands Simulateously
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3
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657
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May 30, 2024
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Gromacs Production Runs taking very long somtimes stopped running
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1
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114
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May 29, 2024
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Pdb2gmx will not recognize adjacent residue when adding entry to .hdb: glycam06j-1 and amber14sb
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3
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123
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May 29, 2024
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Confirming equilibration with RMSD
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1
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183
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May 29, 2024
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CHARMM36m for DNA in GROMACS
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2
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259
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May 29, 2024
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Having all pairtypes defined in the topology file
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4
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306
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May 29, 2024
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Scaling problem for very large systems
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14
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179
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May 29, 2024
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Which GPU is best suited for GROMACS?
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10
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5986
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December 20, 2023
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Topology file error
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2
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109
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May 28, 2024
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Quarterly planning meeting Wed 29 May
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1
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94
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May 28, 2024
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CG martini -RMSD error
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2
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57
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May 28, 2024
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AVX2_256 Doesn't Build?
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2
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135
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May 28, 2024
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Production run mdp file
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6
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817
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May 28, 2024
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Problem of misplaced atom in linked sugar
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2
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113
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May 28, 2024
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Distance restraints for multiple copies of same peptide
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1
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108
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May 28, 2024
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Simulating protein-ligand-cofactor (Invalid order for directive atomtypes)
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2
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113
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May 28, 2024
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How to set md arguments for nvidia GPUs and AMD CPU
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1
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86
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May 28, 2024
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Gromacs2023.4 installation error with cp2k2023.2
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3
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223
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May 28, 2024
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