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Harvesting only electrostatic force from rerun
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4
|
494
|
September 16, 2022
|
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I want to calculate distance between the atom om of DNA and atom of ligand
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1
|
920
|
September 16, 2022
|
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Calculate dielectric constant
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4
|
596
|
September 16, 2022
|
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How to offload more work on GPU than CPU?
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2
|
805
|
September 16, 2022
|
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Concatenation of xtc files
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6
|
2299
|
September 16, 2022
|
|
How to simulate the stabilizing effect of trehalose towards and enzyme?
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3
|
285
|
September 15, 2022
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LINCS Error during Equilibration Step
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4
|
1269
|
September 15, 2022
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Interfacial tension between oil and water
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0
|
411
|
September 15, 2022
|
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Surface tension result, correct number but negative, Godin
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9
|
594
|
September 15, 2022
|
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Pca analysis problem
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0
|
265
|
September 15, 2022
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Freezegrps are silently overridden for charmm tip3p water molecules that are settled
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2
|
329
|
September 15, 2022
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Copy atomtype to new one with the same bonded interactions
|
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1
|
210
|
September 15, 2022
|
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Charmm36 ff port has a missing dihedral for some N-terminal NH2 builds
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1
|
452
|
September 15, 2022
|
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Dramatically different results on GPU and CPU
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2
|
586
|
September 14, 2022
|
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PMF Calculation
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1
|
749
|
September 14, 2022
|
|
Lmod-style module file for gromacs on a cluster?
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3
|
481
|
September 14, 2022
|
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REMD restart
|
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1
|
686
|
September 14, 2022
|
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I want to calculate mmgbsa for dna ligand interaction
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0
|
257
|
September 14, 2022
|
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Dna-ligand rmsd graph analyze
|
|
10
|
816
|
September 14, 2022
|
|
Got a fatal error after adding ions command
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2
|
420
|
September 13, 2022
|
|
Problem while reading RNA.rtp in latest OPLS force field
|
|
1
|
365
|
September 13, 2022
|
|
Fatal error in protein - ligand md run
|
|
8
|
705
|
September 12, 2022
|
|
Simulating phosphoserine / phosphothreonine
|
|
3
|
482
|
September 12, 2022
|
|
Getting an 'error' during Ligand topology steps!
|
|
2
|
388
|
September 12, 2022
|
|
Strip solvent from trajectory - Cannot do both runtime modification and charge-zeroing/index
|
|
6
|
1364
|
September 12, 2022
|
|
How to compute energies of individual proteins in a system using GROMACS gmx mdrun rerun?
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|
2
|
525
|
September 12, 2022
|
|
Ligand addition to a membrane protein - lipid bilayer system and Gromacs Simulation?
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0
|
273
|
September 10, 2022
|
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Managing long simulations (restart and new MD2 run cases)?
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|
3
|
329
|
September 9, 2022
|
|
RMSD Analysis
|
|
1
|
505
|
September 9, 2022
|
|
Grommp adding molecules?
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|
1
|
394
|
September 9, 2022
|