Does gmx rama take care of pbc effect?

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1

GROMACS version:2021
GROMACS modification: No
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If part of a protein cross periodic boundary condition, does it affect the calculation of phi and psi angle of gmx rama command ?

2

Hi,
to be on the save site, you can process the trajectory file with gmx trjconv such as that the protein/peptide does not cross the box and then run gmx rama
Best regards
Alessandra