|
How do we use gmx polystat?
|
|
2
|
19
|
April 26, 2024
|
|
How to do an angular RDF calculation?
|
|
4
|
535
|
April 26, 2024
|
|
Free volume calculation, van der Waals radii
|
|
2
|
660
|
April 22, 2024
|
|
Free Energy calculation for Protein ligand complex
|
|
0
|
27
|
April 17, 2024
|
|
Gmx angle during dPCA
|
|
1
|
29
|
April 16, 2024
|
|
Why is coulomb SR energy different sign using different forcefields?
|
|
13
|
152
|
April 11, 2024
|
|
Error "mismatch in the contents" in Gromacs
|
|
7
|
98
|
April 10, 2024
|
|
About the Radial distribution function
|
|
0
|
38
|
April 10, 2024
|
|
Wrong numbers of atoms in groups obtained with make_ndx
|
|
5
|
63
|
April 10, 2024
|
|
How do we compare density profiles when interfaces are not located at the same position in the box?
|
|
0
|
33
|
April 9, 2024
|
|
RDF suddenly drops from 1
|
|
1
|
55
|
April 5, 2024
|
|
How to compute properties in a spherical region
|
|
0
|
44
|
April 4, 2024
|
|
Modify gmx analysis code (gmx saxs) for OpenMP acceleration
|
|
0
|
41
|
April 3, 2024
|
|
Peptide moving out of the box during peptide-protein MD
|
|
2
|
77
|
April 3, 2024
|
|
Abnormally Large 2nd Moment of Acceleration Values (<U^2> = <F^2>/M^2)
|
|
0
|
32
|
April 1, 2024
|
|
Calculating zeta potential from 'potential.xvg'
|
|
0
|
55
|
March 29, 2024
|
|
Gmx densmap gives invalid next size error
|
|
3
|
77
|
March 28, 2024
|
|
On the calculation of the mean square displacement in the z direction
|
|
1
|
63
|
March 27, 2024
|
|
Gmx trjcat
|
|
1
|
70
|
March 25, 2024
|
|
Error in h-bond file (hbond.xvg) in Gromacs 2024-dev-20230329-26add465fa
|
|
1
|
92
|
March 22, 2024
|
|
Editing trajectory based on time
|
|
1
|
112
|
March 21, 2024
|
|
How to know which frame of trajectory has a minimum energy in free energy landscape analysis?
|
|
3
|
579
|
March 20, 2024
|
|
Viscosity of pure liquid
|
|
9
|
721
|
March 19, 2024
|
|
NAMD+MM_GBSA/PBSA for per residue energy decomposition
|
|
0
|
63
|
March 16, 2024
|
|
About the gmx angle command in gromacs
|
|
2
|
66
|
March 15, 2024
|
|
Coarse-grained md simulatioin
|
|
2
|
77
|
March 14, 2024
|
|
Using dynamic selections with tools such as trjconv
|
|
11
|
1028
|
March 14, 2024
|
|
Molar heat capacity - GMX dos
|
|
0
|
51
|
March 13, 2024
|
|
'gmx wham' counts wrong column number in the pull coordinate selection file
|
|
3
|
98
|
March 13, 2024
|
|
The mean square displacement is calculated by dividing the region
|
|
6
|
93
|
March 12, 2024
|