|
Problem with Introduction to Molecular Dynamics tutorial
|
|
4
|
51
|
January 11, 2025
|
|
RMSD shoots up
|
|
17
|
1505
|
January 11, 2025
|
|
Failed to visualise the bonds between two beads of coarse-grained model in vmd software
|
|
2
|
37
|
January 11, 2025
|
|
Adding an organic molecule to OPLS-AA force field
|
|
0
|
48
|
January 11, 2025
|
|
Writing the full RMSD matrix in gmx cluster
|
|
2
|
88
|
January 10, 2025
|
|
Ion Parameters in Amber99bsc1 Force Field
|
|
0
|
20
|
January 10, 2025
|
|
Pseudo-atom for halogen bonding
|
|
0
|
17
|
January 10, 2025
|
|
Using dynamic indices for outputting cluster centroids
|
|
0
|
11
|
January 10, 2025
|
|
GROMACS performance on CPU 8 cores/Installation to non-standard location
|
|
3
|
53
|
January 10, 2025
|
|
Fatal error C1001: Internal compiler error only in Release build by Visual Studio 2019
|
|
9
|
1680
|
January 10, 2025
|
|
Missing define in .mdp Extracted from .tpr and Restraint Confirmation
|
|
4
|
30
|
January 10, 2025
|
|
On FF parameterization of molecules with non-zero valence
|
|
3
|
14
|
January 10, 2025
|
|
Error in user input: Invalid input values Required option was not provided
|
|
1
|
36
|
January 10, 2025
|
|
Gmx dssp gives wrong secondary structure results
|
|
5
|
925
|
January 10, 2025
|
|
DNA MDS set-up
|
|
2
|
29
|
January 9, 2025
|
|
Gromacs 2023: Segmentation fault with gmx anaeig (but no problem with Gromacs 2022.4)
|
|
6
|
1082
|
January 9, 2025
|
|
Tau values for equilibration
|
|
3
|
73
|
January 9, 2025
|
|
Atom index out of bound
|
|
3
|
84
|
January 9, 2025
|
|
January 8th, biweekly GROMACS developer meeting
|
|
6
|
130
|
January 9, 2025
|
|
GMX_MMPBSA interval
|
|
0
|
18
|
January 8, 2025
|
|
Biweekly developer meeting: update
|
|
1
|
29
|
January 8, 2025
|
|
Position restraints in NVT
|
|
6
|
60
|
January 8, 2025
|
|
Working on Doxygen Update
|
|
3
|
31
|
January 8, 2025
|
|
Error in generating ligand topology using CGenFF python script
|
|
12
|
1453
|
January 8, 2025
|
|
Problem in generation of the topology and .gro file
|
|
7
|
50
|
January 8, 2025
|
|
Error in networkx
|
|
1
|
21
|
January 8, 2025
|
|
Warning or Errors of MD, NVT,NPT run for Protein Complex
|
|
6
|
49
|
January 8, 2025
|
|
How to use Clay.ff with gromacs for molecular dynamics simulation of mica
|
|
2
|
74
|
January 8, 2025
|
|
Handling of PBCs with multiple peptides
|
|
2
|
21
|
January 7, 2025
|
|
GMX_MMPBSA_ ana error
|
|
2
|
78
|
January 7, 2025
|