|
Gromacs not reading dihedral which is given in respective file
|
|
0
|
65
|
June 5, 2024
|
|
PBC and restraints
|
|
0
|
67
|
June 5, 2024
|
|
Error in solvation
|
|
2
|
178
|
June 5, 2024
|
|
Fatal Error: atom X in multiple T-coupling groups
|
|
7
|
1114
|
June 5, 2024
|
|
Restarting simulation from trajectory frames
|
|
4
|
190
|
June 5, 2024
|
|
Ligand conformation changed after equilibration
|
|
2
|
159
|
June 4, 2024
|
|
Gromacs methanol solvate
|
|
3
|
179
|
June 4, 2024
|
|
Gromacs 2021 vs other versions
|
|
0
|
81
|
June 4, 2024
|
|
Loosing chain name in ".pdb" output after mdrun
|
|
2
|
416
|
June 4, 2024
|
|
DSSP wont run for one chain of dimeric peptide connected by dissulfide bond
|
|
6
|
147
|
June 4, 2024
|
|
Error met in pulling
|
|
6
|
83
|
June 4, 2024
|
|
Mismatch in frames
|
|
5
|
144
|
June 4, 2024
|
|
Restarting the simulation
|
|
7
|
337
|
June 4, 2024
|
|
Compilation with double and simple precision simultaneously
|
|
0
|
71
|
June 3, 2024
|
|
Fatal eror adding entry in rtp
|
|
1
|
85
|
June 3, 2024
|
|
Saving velocities and forces for a subset of the trajectory
|
|
1
|
86
|
June 3, 2024
|
|
Comparison monomer simulations
|
|
0
|
75
|
June 3, 2024
|
|
Salt bridges
|
|
0
|
141
|
June 3, 2024
|
|
Ligand topology generation
|
|
0
|
121
|
June 3, 2024
|
|
Problem with H-bond
|
|
8
|
629
|
June 2, 2024
|
|
CGENFF for creating lipid parameters
|
|
0
|
84
|
June 2, 2024
|
|
T-REMD simulations result in 5x performance
|
|
2
|
191
|
June 2, 2024
|
|
FEP Calculations Protein-Protein Complex
|
|
3
|
107
|
June 2, 2024
|
|
Error: reading tpx file (md_0_1.tpr) version 119 with version 110 program
|
|
5
|
480
|
June 1, 2024
|
|
Grompp needs a posre.itp file
|
|
1
|
196
|
June 1, 2024
|
|
How to create a pdb file for antiparallel protomers of a dimer using CHARMM-GUI
|
|
0
|
66
|
June 1, 2024
|
|
Potential error when I merge 3 cells
|
|
2
|
687
|
June 1, 2024
|
|
Error while using position restarints in MD run
|
|
36
|
306
|
June 1, 2024
|
|
Why CA and CB H atoms in aminoacid residues are not included in topology when gromos FF is used?
|
|
2
|
62
|
June 1, 2024
|
|
Analysis for Protein-Ligand-POPC Membrane system
|
|
0
|
99
|
June 1, 2024
|