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RMSD graph of protein_ligand complex
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2
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1987
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March 7, 2024
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The probability of hydrogen bond formation and hydrogen bond angle
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2
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182
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March 7, 2024
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Installation on Windows11
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3
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396
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March 6, 2024
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Acceptable RMSD fluctuations
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8
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240
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March 6, 2024
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High RMSD fluctuations
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2
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129
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March 6, 2024
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Problem in creating Topology by command pdb2gmx
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3
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184
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March 6, 2024
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Blow up during NPT equilibration using Berendsen barostat
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3
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487
|
March 6, 2024
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Simulation not saving trajectory or moving forward
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2
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141
|
March 6, 2024
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Error in ligand.str file
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0
|
105
|
March 6, 2024
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Ligand Topoly for GROMOS 96
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0
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136
|
March 6, 2024
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Cloud Computing Request
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7
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426
|
January 14, 2024
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Error in generating ligand topology using CGenFF and python 3.9
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1
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172
|
March 6, 2024
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CG-CD1 TRP bond oscillational less than 0.004 fs
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1
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127
|
March 6, 2024
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Regarding the error undefined reference to `srot_', `strsm_'
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2
|
1567
|
March 6, 2024
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Problem with acetylated and amidated termini in pdb2gmx command
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1
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503
|
March 6, 2024
|
|
Quarterly planning meeting Wed 6th March
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1
|
167
|
March 5, 2024
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Input/Output files location
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1
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116
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March 5, 2024
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Umbrella sampling opposite pull
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1
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339
|
March 5, 2024
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How to restart a QM/MM MD run cp2k/gromacs
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1
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168
|
March 5, 2024
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RMSD analysis doubt
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4
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92
|
March 5, 2024
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Strange PMF profile after umbrella sampling of the peptide pulling
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7
|
601
|
March 5, 2024
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Water flux in ion channels
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3
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134
|
March 5, 2024
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Clustering analysis - Gromacs
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1
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315
|
March 5, 2024
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Autocorrelation in gmx analyze
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7
|
756
|
March 4, 2024
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Persistent Issue: GROMACS Installation Troubles
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2
|
328
|
March 4, 2024
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Large deviations from expected bond lengths reported by gmx check
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0
|
118
|
March 4, 2024
|
|
What vdw and electrostatic parameters to use with Amber ff19sb
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2
|
387
|
March 4, 2024
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Why minimization becomes inf?
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2
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130
|
March 4, 2024
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Low Gromacs Performance on WSL Environment
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4
|
259
|
March 4, 2024
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IUPAC Nomenclature in Hydrogen Naming with pdb2gmx
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7
|
426
|
March 4, 2024
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