|
New "names" for ions and carbohydrate?
|
|
3
|
494
|
September 9, 2022
|
|
Extending NVT simulation time
|
|
1
|
281
|
September 9, 2022
|
|
Inquiry regarding protonation status
|
|
2
|
329
|
September 9, 2022
|
|
Coordinated Water molecules in PDB crystal structure
|
|
1
|
691
|
September 8, 2022
|
|
LINCS going haywire for hydronium ion
|
|
2
|
410
|
September 8, 2022
|
|
Asymmetric membranes and PMF
|
|
8
|
613
|
September 8, 2022
|
|
How to install and run ACPYPE on Linux?
|
|
28
|
5565
|
September 8, 2022
|
|
Parametrization of H+ and OH-
|
|
9
|
1124
|
September 8, 2022
|
|
Fatal error: Invalid angle type 0
|
|
2
|
614
|
September 7, 2022
|
|
What is the best way to perform replica MD simulations?
|
|
3
|
1344
|
September 7, 2022
|
|
Regarding installation of gromacs 2021.3 on GPU with MPI
|
|
0
|
275
|
September 7, 2022
|
|
Warnings in Gromacs
|
|
6
|
524
|
September 7, 2022
|
|
Water box expansion in steered MD
|
|
0
|
350
|
September 6, 2022
|
|
How is collision treated in gromacs leapfrog md?
|
|
1
|
345
|
September 6, 2022
|
|
Restraining a protein with respect to a transformed structure
|
|
0
|
268
|
September 6, 2022
|
|
Fatal error: Requested Parrinello-Rahman barostat with md-vv
|
|
1
|
692
|
September 6, 2022
|
|
Time missmach between concatenated simulations
|
|
0
|
306
|
September 6, 2022
|
|
Free energy calc gives "WARNING: Some of these results violate the Second Law of Thermodynamics"
|
|
5
|
1462
|
September 6, 2022
|
|
Lysozyme in Water tutorial
|
|
2
|
583
|
September 6, 2022
|
|
Why load balancing is limited by minimum cell size in dimension X,Y,Z?
|
|
1
|
1075
|
September 5, 2022
|
|
Fatal error: Topology include file "gromos53a6_lipid.ff/forcefield.itp" not found; MEMBRANE PROTEIN
|
|
15
|
676
|
September 5, 2022
|
|
Harmonic and Morse bonds
|
|
2
|
280
|
September 5, 2022
|
|
Gromacs ERROR at ionization steps
|
|
1
|
232
|
September 5, 2022
|
|
Water overlap when editconf with non cubic box (truncated octahedron/dodecahedron)
|
|
4
|
414
|
September 5, 2022
|
|
Unknown bond_atomtype CG2DC2
|
|
1
|
310
|
September 5, 2022
|
|
Error when running mdrun with gpu
|
|
10
|
1194
|
September 3, 2022
|
|
Why huge amount of SOL added during gmx genion in some cases?
|
|
5
|
460
|
September 3, 2022
|
|
Error in energy minimization done after system inflation
|
|
2
|
319
|
September 3, 2022
|
|
Non-zero total net charge after neutralizing
|
|
15
|
1600
|
September 2, 2022
|
|
Gmx bar output
|
|
4
|
928
|
September 2, 2022
|