A question about gen_seed in the log file
|
|
4
|
88
|
April 20, 2022
|
Gromacs freeze proplems
|
|
2
|
71
|
April 20, 2022
|
NPT production run crash "94 particles communicated to PME rank 2 are more than 2/3 times..."
|
|
1
|
55
|
April 14, 2022
|
PME GPU does not support interpolation orders other than 4?!
|
|
1
|
75
|
April 13, 2022
|
Mpirun for mdrun
|
|
0
|
46
|
April 13, 2022
|
Problem with CHARMM virtual sites in drug molecules
|
|
4
|
73
|
April 13, 2022
|
Zero interaction energy from mdrun -rerun in GMX 2020 vs non zero energies in GMX 2018
|
|
7
|
364
|
April 11, 2022
|
How to avoid the molecules being too close together in multiple molecules MD simulation?
|
|
6
|
150
|
April 11, 2022
|
Can we convert xtc to cms of desmond for analysis
|
|
1
|
107
|
April 10, 2022
|
Selective integrated tempering sampling?
|
|
0
|
34
|
April 10, 2022
|
Error during EM process
|
|
10
|
74
|
April 9, 2022
|
MD Analysis
|
|
2
|
64
|
April 8, 2022
|
Invalid line in fnIII-12_SAMch3.gro for atom 1417
|
|
5
|
38
|
April 8, 2022
|
Error in pdb2gmx
|
|
2
|
61
|
April 7, 2022
|
Errors Running Gromacs Simulation on HPC
|
|
0
|
92
|
April 6, 2022
|
Validation of MD simulation results
|
|
1
|
75
|
April 6, 2022
|
Output file precision setting
|
|
0
|
45
|
April 6, 2022
|
Why is it different every time the interaction energy is calculated?
|
|
8
|
111
|
April 6, 2022
|
Error in missing hydrogen atoms
|
|
2
|
66
|
April 4, 2022
|
Dih types error in ions adding steps in gromacs
|
|
3
|
61
|
April 2, 2022
|
Applying freezing and restrains to speed up MD simulation
|
|
2
|
101
|
March 30, 2022
|
Total energy can not conserve when using extremely small time step in NVE simulation
|
|
2
|
72
|
March 30, 2022
|
Does freeze-grps speed up MD?
|
|
2
|
408
|
March 30, 2022
|
Error in Ions Adding Stage
|
|
0
|
47
|
March 27, 2022
|
NPT Equilibration Stopped Due to Fatal PME Rank error
|
|
2
|
75
|
March 22, 2022
|
How do I proceed with nvt mdrun step in GROMACS and solve the following error
|
|
8
|
148
|
March 21, 2022
|
High-temperature MD simulations blow up after switching from GROMACS 5.0.2 to 2021.2
|
|
1
|
116
|
March 21, 2022
|
How to recompile GROMACS with GPU support?
|
|
2
|
91
|
March 19, 2022
|
Atom index in position_restraint out of bounds
|
|
1
|
70
|
March 18, 2022
|
Is there constraint forces contribute in what I am saving in the .trr format?
|
|
1
|
51
|
March 14, 2022
|