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A question about gen_seed in the log file
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4
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88
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April 20, 2022
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Gromacs freeze proplems
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2
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71
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April 20, 2022
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NPT production run crash "94 particles communicated to PME rank 2 are more than 2/3 times..."
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1
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55
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April 14, 2022
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PME GPU does not support interpolation orders other than 4?!
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1
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75
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April 13, 2022
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Mpirun for mdrun
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0
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46
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April 13, 2022
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Problem with CHARMM virtual sites in drug molecules
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4
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73
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April 13, 2022
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Zero interaction energy from mdrun -rerun in GMX 2020 vs non zero energies in GMX 2018
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7
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364
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April 11, 2022
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How to avoid the molecules being too close together in multiple molecules MD simulation?
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6
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150
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April 11, 2022
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Can we convert xtc to cms of desmond for analysis
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1
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107
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April 10, 2022
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Selective integrated tempering sampling?
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0
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34
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April 10, 2022
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Error during EM process
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10
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74
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April 9, 2022
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MD Analysis
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2
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64
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April 8, 2022
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Invalid line in fnIII-12_SAMch3.gro for atom 1417
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5
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38
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April 8, 2022
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Error in pdb2gmx
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2
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61
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April 7, 2022
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Errors Running Gromacs Simulation on HPC
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0
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92
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April 6, 2022
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Validation of MD simulation results
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1
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75
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April 6, 2022
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Output file precision setting
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0
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45
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April 6, 2022
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Why is it different every time the interaction energy is calculated?
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8
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111
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April 6, 2022
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Error in missing hydrogen atoms
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2
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66
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April 4, 2022
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Dih types error in ions adding steps in gromacs
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3
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61
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April 2, 2022
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Applying freezing and restrains to speed up MD simulation
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2
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101
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March 30, 2022
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Total energy can not conserve when using extremely small time step in NVE simulation
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2
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72
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March 30, 2022
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Does freeze-grps speed up MD?
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2
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408
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March 30, 2022
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Error in Ions Adding Stage
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0
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47
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March 27, 2022
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NPT Equilibration Stopped Due to Fatal PME Rank error
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2
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75
|
March 22, 2022
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How do I proceed with nvt mdrun step in GROMACS and solve the following error
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8
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148
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March 21, 2022
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High-temperature MD simulations blow up after switching from GROMACS 5.0.2 to 2021.2
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1
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116
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March 21, 2022
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How to recompile GROMACS with GPU support?
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2
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91
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March 19, 2022
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Atom index in position_restraint out of bounds
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1
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70
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March 18, 2022
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Is there constraint forces contribute in what I am saving in the .trr format?
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1
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51
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March 14, 2022
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