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Error in MD simulation
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0
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260
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December 14, 2023
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Specifying time length of protein simulation
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1
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218
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December 14, 2023
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Command to run gromacs in parallel
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2
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147
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December 13, 2023
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如何对超声环境进行模拟
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1
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141
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December 13, 2023
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How to set awh1-dim1-diffusion and awh1-error-init properly
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4
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212
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December 12, 2023
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MD simulations with over 62 chains
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0
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129
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December 12, 2023
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Lincs warnings in NVT equilibration runs for alchemical calculations
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0
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239
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December 9, 2023
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How to Model Black Lipid Membrane (BLM) Experiments using MD simulation
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0
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106
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December 8, 2023
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Performing MD in non-aqueous medium
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6
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193
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December 7, 2023
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Grommp fatal error
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1
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121
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December 6, 2023
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Generating the topology for silica nanoparticles
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1
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242
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December 6, 2023
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How to sample different maximum dimensions of a protein
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1
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150
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December 1, 2023
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Energy minimization_ potential positive
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3
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199
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November 30, 2023
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Fatal error: No GPU is detected. please need help
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5
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266
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November 27, 2023
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Shifts within periodic boundaries
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2
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236
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November 27, 2023
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Is it important to repeat analysis
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1
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110
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November 22, 2023
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Implicit solvent in gromacs?
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0
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137
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November 21, 2023
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How to solve the GROMACS error "One or more water molecules can not be settled" during SMD?
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1
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343
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November 20, 2023
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The Feasibility of Bond Cleavage in a Molecular Dynamics Simulation
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4
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166
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November 19, 2023
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Are these timings fine?
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3
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204
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November 14, 2023
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Solvent molecules break apart after executing gmx-solvate command
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0
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122
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November 13, 2023
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Generate supercell from unit cell
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0
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159
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November 13, 2023
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Regarding the error of MD run with CHARMM36 force field
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1
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147
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November 10, 2023
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REMD simulation in water and vacuum environment
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1
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202
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November 8, 2023
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Helix unfolding despite position restraints
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0
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150
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November 7, 2023
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Restrains positions issue of metal ions in protein active site
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3
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299
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November 6, 2023
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Parameters from old trajectory using cpt file
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0
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105
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November 6, 2023
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Membrane box distorted after removing pbc
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2
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240
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November 6, 2023
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An error with The total potential energy is -nan
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2
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542
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November 2, 2023
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How do you deal with proteins having large loop?
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1
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160
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November 2, 2023
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