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Creating topology for ligand
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2
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555
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August 15, 2022
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Gmx stopped unexpectedly - error in gmx mdrun
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0
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345
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August 15, 2022
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Is it possible to use umbrella sampling to simulate the complex membrane model?
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4
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341
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August 15, 2022
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Triple bond oscillation
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1
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745
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August 14, 2022
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Speeding up pdb2gmx to create top file
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1
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275
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August 13, 2022
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Poor performance on RTX A4000
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2
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579
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August 12, 2022
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Strange behaviour or behave as designed?
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2
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318
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August 12, 2022
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Tutorial 5 Protein-Ligand - Missing topol
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1
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540
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August 11, 2022
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How to pin down relative groups in minddist and pair-dist?
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1
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376
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August 11, 2022
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Energy minimization errors
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3
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1316
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August 11, 2022
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Packing fraction related issues
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0
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214
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August 10, 2022
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Please guide me step by step on how to use plumed in gromacs and run multiple simulation
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1
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427
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August 10, 2022
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Could you explain to me what is comm-mode in GROMACS?
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3
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1363
|
August 10, 2022
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Salt dipoles (Mg-SO4) from XTC format shows zero for free ions
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1
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336
|
August 10, 2022
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Which force field is preferable for the stochastic collision dynamics of Ionic compund?
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0
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284
|
August 9, 2022
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Cmake eorror
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0
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876
|
August 9, 2022
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Gromacs 2018.4 install make check failed
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2
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504
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August 8, 2022
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Using gmx distance for system with odd number of atoms
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1
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403
|
August 8, 2022
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How can delete a topic?
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1
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384
|
August 8, 2022
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Error in use of GROMPP
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14
|
6127
|
August 8, 2022
|
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Mdp options
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5
|
1006
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August 7, 2022
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SASA for a single residue
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3
|
1084
|
August 6, 2022
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Creating a gold slab in Gromacs
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1
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441
|
August 5, 2022
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MD simulation for a protein with Cu ions in the structure
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1
|
819
|
August 5, 2022
|
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Physicality of force in accelerate MD option
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1
|
440
|
August 5, 2022
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Fatal Error in Steered MD simulation
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3
|
561
|
August 5, 2022
|
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Planarity of the biphenyl ring is not maintained
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2
|
438
|
August 5, 2022
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Zero conformational entropy for each residue based on C-alpha atoms
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0
|
284
|
August 5, 2022
|
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How to describe cluster center?
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0
|
278
|
August 5, 2022
|
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How to separate chains from topology (.tpr) files in GROMACS to visualize in Chimera?
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0
|
853
|
August 4, 2022
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