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How to prepare an infinite DNA system?
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1
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261
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November 15, 2021
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Protein-ligand simulation
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27
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4221
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August 17, 2022
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Finding the Center of Mass coordinate for a lipid molecule
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8
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1144
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April 28, 2024
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How can I find the center of mass of a lipid bilayer?
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7
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790
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April 28, 2024
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Cneter of mass one molecule?
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6
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1110
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April 28, 2024
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Calculate distance between each residue and center of mass of the protein for all frames
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2
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811
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April 28, 2024
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Thermal transport in semiconductor nanostructures (non-Gromacs)
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2
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300
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April 27, 2024
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Isothermal compressibility of biphasic system
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0
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74
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April 27, 2024
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Temperature change
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9
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530
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April 27, 2024
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Unable to split the ligand SDF file successfully
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2
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222
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April 27, 2024
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REST2 Simulation energy calculations
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0
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236
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April 27, 2024
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How do we use gmx polystat?
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2
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226
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April 26, 2024
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Estimation of stress on structure
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1
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96
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April 26, 2024
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PBC = xy slow performance
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1
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267
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April 26, 2024
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Deform-issue with certain versions of GROMACS
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1
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170
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April 26, 2024
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How to calculate concentration of metal ion used in md simulating system?
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1
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103
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April 26, 2024
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Difference between x2top and LigParGen ff generation (dodecane)
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1
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131
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April 26, 2024
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Simulations with free energy calculations on GPU is several time slower than normal simulations
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6
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1039
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April 26, 2024
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Problem with pdb2gmx as it says there is no resdiue type XXX
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6
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507
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April 26, 2024
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Energy minimization error. please help me
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2
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159
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April 26, 2024
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How to fix negative pressure?
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8
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1254
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April 26, 2024
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How to do an angular RDF calculation?
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4
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715
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April 26, 2024
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Error in Gromacs run?
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4
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520
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April 25, 2024
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Running Simulations Using Files Generated from Martinize+Insane
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0
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105
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April 25, 2024
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Distance restraint on the center of mass distance between 2 monomers in my dimer
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0
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58
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April 25, 2024
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Gromacs SYCL Spack build error
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0
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109
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April 25, 2024
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Slow NPT simulation
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7
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254
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April 25, 2024
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Topology versus initial configuration
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2
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65
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April 25, 2024
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OPC through pdb2gmx
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1
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295
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April 25, 2024
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Lincs Warning in SFE calculations
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0
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102
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April 25, 2024
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