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Error file itp
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1
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83
|
February 28, 2024
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Why do we call topology files 'topology'?
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2
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192
|
February 28, 2024
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Parameter generation for protein with bound Zn
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1
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170
|
February 27, 2024
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System I/O Error: Could not open file 'mdout.mdp'
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2
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245
|
February 27, 2024
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Error while solvation of protein
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4
|
261
|
February 27, 2024
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Convert protein & ligand .xtc to same PDB file
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2
|
2891
|
February 27, 2024
|
|
Biphasic system at different temperature
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|
0
|
104
|
February 27, 2024
|
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Number of coordinates in topology showing more than expected
|
|
8
|
144
|
February 27, 2024
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High RMSD value but its stable
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2
|
715
|
February 26, 2024
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Simulate a too large system
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0
|
104
|
February 26, 2024
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Packmol to pack protein-water in simulation box
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2
|
220
|
February 26, 2024
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Positive potential and Pressure scaling more than 1%
|
|
5
|
540
|
February 26, 2024
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Negative performance MD simulation
|
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5
|
199
|
February 26, 2024
|
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Error: Residue ' ' not found in residue topology database
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|
1
|
1319
|
February 26, 2024
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|
Timestep in MDAnalysis
|
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3
|
132
|
February 26, 2024
|
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Π-π interaction
|
|
1
|
279
|
February 26, 2024
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Interpreting Electrostatic Interactions
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0
|
235
|
February 26, 2024
|
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Electrostatic force between virtual interaction sites
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|
1
|
142
|
February 25, 2024
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problem in md run
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1
|
140
|
February 24, 2024
|
|
The step of Adding ions in an added ion but the step shows No ions to add, will just copy input
|
|
2
|
402
|
February 24, 2024
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|
Angle calculation by gmx gangle
|
|
0
|
232
|
February 23, 2024
|
|
Calculating the volume occupy by water
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|
0
|
154
|
February 23, 2024
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|
Steepest descent (SD) with protein restraint?
|
|
6
|
319
|
February 23, 2024
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How to handle phospho-serine residues in protein structures for Martini coarse-grained simulation?
|
|
0
|
136
|
February 22, 2024
|
|
Regarding the replica exchange molecular dynamics
|
|
2
|
388
|
February 22, 2024
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Slice simulation box in Z direction and compute mobility of water in seperate slices
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2
|
130
|
February 21, 2024
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|
February 21, biweekly GROMACS developer meeting
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|
2
|
321
|
February 21, 2024
|
|
Membrane Protein Simulation: Do Lipids Inhibit Protein Conformational Changes
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2
|
121
|
February 21, 2024
|
|
Tensile test on polymer box
|
|
1
|
198
|
February 21, 2024
|
|
PolySMart: a general coarse-grained molecular dynamics polymerization scheme
|
|
0
|
380
|
February 21, 2024
|