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PACKMOL and gmx2pdb
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0
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129
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February 20, 2024
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CHARMM parameterization destroys ligand structure
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0
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115
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February 19, 2024
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Correcting the pdb file manually
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0
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85
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February 19, 2024
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Inserting a modified residue into a protein/DNA chain using pdb2gmx
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18
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814
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February 17, 2024
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Generation of itp files with small molecules having halides
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0
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84
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February 9, 2024
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Regarding CTAB micelles parameters for GROMACS
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0
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78
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February 9, 2024
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Including parameters of a new molecule in gromacs topology files
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4
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361
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February 6, 2024
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Fatal error: Atom HO2' in residue A 21 was not found in rtp entry ADE with 31 atoms while sorting
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1
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143
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February 6, 2024
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Compass II forcefield compatibility with Gromacs
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1
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160
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February 4, 2024
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Questions about some LJ parameters in charmm36 ff
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9
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140
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February 2, 2024
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Issue of High Potential Energy on Running Minimization
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9
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260
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February 1, 2024
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HEME-Histidine missing dihedrals
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5
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327
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January 29, 2024
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Pdb file with the bond connection information
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2
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119
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January 28, 2024
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Charmm modified residue parameters can't be recognized by charmm force field?
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7
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135
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January 27, 2024
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The system of protein-DNA was unstable and said "Segmentation fault" when i run NPT MD using gromacs
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4
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165
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January 25, 2024
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Gromacs Version
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1
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197
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January 24, 2024
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Loading a Ecoli Ribosome structure in Gromacs 6i0y/4v7u
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2
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102
|
January 24, 2024
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Best force field for miRNA simulations
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2
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274
|
January 20, 2024
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Reax force field applications in gromacs
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1
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113
|
January 20, 2024
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Unknown bond atom type OGTIP3, HGTIP3
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2
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100
|
January 19, 2024
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(PEA)2PbBr4 topology file
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0
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93
|
January 18, 2024
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Residue type 'DA5' not found in residue topology database
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3
|
170
|
January 18, 2024
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Martini PME artefacts
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1
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142
|
January 11, 2024
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MD of a small metal complex for correlation times
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0
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91
|
January 15, 2024
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12-6-4 LJ types nonbonded model in metalloproteins
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7
|
212
|
January 15, 2024
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Use ClayFF in Gromacs
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0
|
163
|
January 12, 2024
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This top-level .itp file has been removed. Edit your topology to include it from your force field di
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4
|
222
|
January 11, 2024
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Running simulations with molecules with two different forcefield in one system
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2
|
217
|
January 8, 2024
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Gmxmmpbsa energy part
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0
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111
|
January 7, 2024
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Fatal error while running gromacs. Atom N not found in building block 1DG while combining tdb &rtp
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1
|
150
|
January 3, 2024
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