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Estimation of stress on structure
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1
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33
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April 26, 2024
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PBC = xy slow performance
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1
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37
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April 26, 2024
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How to calculate concentration of metal ion used in md simulating system?
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1
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17
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April 26, 2024
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There is no file of em.gro after energy minimization
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5
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28
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April 26, 2024
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How to fix negative pressure?
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8
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761
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April 26, 2024
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Lincs Warning in SFE calculations
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0
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18
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April 25, 2024
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Are NVT+NPT equilibrations necessary to precede lipid self-assembly simulations
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6
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68
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April 24, 2024
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Extending Simulaton
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2
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53
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April 23, 2024
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PBC = xy with pressure coupling gives erroneous results
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2
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50
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April 20, 2024
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MDtutorial ligand restraints: Cannot use restrained groups for this system
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1
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29
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April 19, 2024
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Glycosylation Chain ( PTM) on a protein
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0
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30
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April 19, 2024
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Colvars: Error: keyword "customfunction" is not supported
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2
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35
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April 19, 2024
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Assessing the stability of a mutant protein withGROMACS
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1
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44
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April 18, 2024
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Pressure scaling more than 1% in production
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6
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87
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April 18, 2024
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MD simulation of a bridging His coordinated to two ZN atoms
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4
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52
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April 18, 2024
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Error while using position restarints in MD run
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15
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53
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April 16, 2024
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Gromacs in colab is not using full gpu
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4
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91
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April 16, 2024
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I cant remember mdrun command , any solution for that?
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1
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41
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April 14, 2024
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SHAKE agorithm and topology
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0
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35
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April 12, 2024
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Feasibility of custom implementation for SimulatorFunctionType do_md?
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0
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30
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April 12, 2024
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Metadynamics simulation unable to be restarted from checkpoint, despite mdrun maxh flag used
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1
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146
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April 11, 2024
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Unknown left-hand 'mass-repartitioning-factor' in parameter file
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2
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42
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April 11, 2024
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Error "mismatch in the contents" in Gromacs
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7
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98
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April 10, 2024
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About the Radial distribution function
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0
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38
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April 10, 2024
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Energy minimization of a non orthorhombic surface
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12
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120
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April 9, 2024
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Reading tpx file version 119 with version 103 program
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8
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5706
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April 9, 2024
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Steered MD doesn't produce expected force graph
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1
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58
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April 8, 2024
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How can I calculate the persistence length of a polymer using the gmx polystat command?
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2
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63
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April 8, 2024
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C-terminus protonation using PDB2GMX
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2
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86
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April 4, 2024
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Protein come out of the box but trjconv command didn't fix the problem
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9
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2713
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April 3, 2024
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